PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC351_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 852aa    MW: 90558.9 Da    PI: 5.4189
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC351_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.20.000331511911055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                + R +r+ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  RrC351_p2 151 KVRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 191
                668889999*********999.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.877141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-10146201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-6149197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.15E-4149195No hitNo description
PfamPF036002.8E-29429783IPR004680Citrate transporter-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MGDTVGDQAM VETPGAPSFS ELLMLSDGFL SSSEGHQREA NGGDGGEDSF SFVFSGTNGS  60
KMLCFSGDCQ NGDESLFQEP SLPSGVSLSD PSSCTVDICK KSSDTCTEEK STKPTNKKRT  120
GSGNGQNMDH NRKPSKKCQK NQDKSSVGIA KVRKERLGER IAALQQLVSP YGKTDAASVL  180
HEAMGYIKFL QDQIQVLCSP YLINYSLDGG AVTGDITPGK KVRDLRSRGL CLVPVSSTVN  240
VENSNGADLW SPATANSSPT FKSLSLSLFP RCSPMAVLPI GSHFAPPHKL TKRYTSSPPI  300
TLSTRLPQNV SVSKLSGTTT NSRLSRHSVL ARAEDKIRVS SPPPLEEPSQ PLDDSDLEDL  360
LEGSCDPICS VDEPSSSYFE ANYQPKTDIV KAVAILAAAL TGTAAINHSW VAANQDVAMA  420
LLFGIGYAGI IFEESLAFNK SGVGLLMAVS LWVVRGIGAP STEIAVAELQ HATAEVSEIV  480
FFILGAMTIV EIVDAHQGFK LVTDNITTRK PKTLLWVVGF VTFFLSSILD NLTSTIVMVS  540
LLRKLVPQSE YRKLLGAVVV IAANAGGAWS PIGDVTTTML WIHGQITTLP TIQGLFIPSA  600
ISLAVPLALM SLSSEVNEKG QDSSDVLASE KMAPRGKLVF GVGLGALVFV PVFKALTGLP  660
PYMGILLGLG VLWVLTDAIH YGESERQKLK VPQALSRIDT QGALFFLGIL LSVSSLESAG  720
ILREIANYLD ANIPNIELIA SAIGVVSAII DNVPLVAATM GMYDLTSFPQ DSEFWQLVAF  780
CAGTGGSMLI IGSAAGVAFM GMEKIDFFWY FRKVSGFAFA GYAAGIAAYL ALQSVHFSIP  840
TTVAQIPFLT GS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0849220.0AY084922.1 Arabidopsis thaliana clone 121587 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013724570.10.0PREDICTED: Na(+)/H(+) antiporter NhaD-like
TrEMBLA0A078I8I30.0A0A078I8I3_BRANA; BnaA05g20580D protein
TrEMBLM4E0Y00.0M4E0Y0_BRARP; Uncharacterized protein
STRINGBra022427.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74022234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-128bHLH family protein